PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456285.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 663aa    MW: 74446.9 Da    PI: 9.9405
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-101364348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
   XP_016456285.1 13 TWSTWEELLLAFAVKRHGLNDWESVAMELQsrsslpALLTAQICKDKYRDLR 64
                     7**********************************9889*********9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.353664IPR017877Myb-like domain
SuperFamilySSF466891.09E-6871IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-5871IPR009057Homeodomain-like
SMARTSM007174.3E-41066IPR001005SANT/Myb domain
PfamPF002493.4E-81263IPR001005SANT/Myb domain
CDDcd001670.006211963No hitNo description
SMARTSM002975.7E-14300405IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.3E-16305406IPR001487Bromodomain
SuperFamilySSF473704.84E-18306403IPR001487Bromodomain
CDDcd043694.09E-16307400No hitNo description
PfamPF004391.8E-11311390IPR001487Bromodomain
PROSITE profilePS5001412.747315386IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEKESGTTKT TTTWSTWEEL LLAFAVKRHG LNDWESVAME LQSRSSLPAL LTAQICKDKY  60
RDLRRRFINK NNSYHDEQFN DVIDDGLDGD GDVTIPWIEE LRQLRVAELK QEVQRYDLSI  120
QSLQLKVKKM EEEREQSLKE ESSDDGQKPD LEDVKEERSQ NDKNSGADGK PEESTGKAVS  180
SEESDRENRS FNESNSTENR EIGVKNEPEP VETGEFRPVQ EAKPVSEEDS YNGSSSDRHE  240
EKKISRESGE SKEETKENSD VQSTATLTKK KRQRGGDGGR SCGDAVETGS PAVGLSKGEG  300
AAKSEPLIEF LDIIRSHKRG SMFKRRLDSQ KTDKYKSMIR RHMDLETVQA RIDDGSYCSC  360
PSKFYLDLLL IFNNAIVYFP KSSPESTAAN EFRGIVMEEL KKKRTRQKDS SPGPGPLRIQ  420
PKPELERSDS LLAKHKSTAP IVVCRKRSSI SAKAAVSGNI KPEKQDDSKP PLNPKPPIKT  480
SSNEEECSIK LGMKEKPVTG VRSMRRSNKG RPNNNASQSN NNQTTNTKQT NTNADKKEEA  540
KTEKKKEEAK KRGAAADFLK RIKKNSPTKG TLMETLKNPT EDVVVKGNKR EQQKKKVDER  600
RETPVKRSGG SGGGGGKEEG SPSKRTVGRP PKRGGKETVQ EKRGRENSEK DDSSKRPKKR  660
SRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273KKKRQR
2654662KRPKKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456285.10.0PREDICTED: uncharacterized protein LOC107780269
TrEMBLM1A7730.0M1A773_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-87DNA-binding bromodomain-containing protein